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# MCP Memory Server Architecture & Workflow Design
## 1. Core Architecture
The `mcp-memory` system runs as a **single, continuously running background daemon natively on Windows**. It manages the state of the Antigravity knowledge graph and serves as a universal backend for both Windows and WSL environments.
### Why this design?
* **Cross-OS I/O Optimization:** Prevents the WSL agent from performing slow, heavy filesystem writes against the mounted Windows `C:\` drive.
* **Concurrency & Locking:** A single daemon holds the lock on the `mcp_memory` JSON files, preventing data corruption and eliminating complex delta-reconciliation between parallel WSL and Windows processes.
* **Dual Transport System:** Utilizes both `stdio` and HTTP transports concurrently. The local Windows `agy` instance connects natively via standard `stdio`, while the Axum HTTP server provides synchronous, non-blocking access for WSL clients and external scripts.
## 2. Server Transport & Endpoints (Axum)
The daemon uses the `axum` and `rust-mcp-axum` crates, binding to `0.0.0.0:3000` to serve the network.
### Standard MCP Endpoints
* `GET /sse`: The Server-Sent Events (SSE) endpoint. Antigravity clients connect here to keep a one-way pipe open for receiving pushed responses and event notifications from the server.
* `POST /messages`: The JSON-RPC endpoint. Clients use this to send tool calls and resource reads up to the server.
### Custom Integration Endpoints
* `GET /`: The Brain Monitor live HTML dashboard (returns real-time metrics UI).
* `GET /api/stats`: Returns a JSON snapshot of current entity, relation, task, and tech debt counts.
* `GET /gate/verify`: A lightweight, deterministic endpoint used by external scripts to verify if an action (like a `git push`) is authorized based on the current state.
## 3. Client Connections
The Antigravity configurations (`mcp_config.json`) utilize the dual-transport system:
* **Windows `agy`:** Spawns and connects to the local daemon natively via `stdio` subprocess execution.
* **WSL (Linux) `agy`:** Connects to the running Windows HTTP daemon via the host network proxy, e.g., `http://127.0.0.1:3000/sse`.
## 4. Git Integration (Global Wrapper)
Instead of relying on localized per-repository Git hooks (like `.git/hooks/pre-push`), the system leverages a **global bash/PowerShell alias wrapper** for the `git` command. This intercepts `git` commands universally across the OS.
### Workflow Example (Push Safety Gate)
1. The user types `git push`.
2. The global wrapper intercepts the command.
3. It makes a synchronous HTTP request to the local daemon: `curl -s http://localhost:3000/gate/verify`.
4. If the endpoint returns `200 OK` (indicating the `PrePushAuditor` subagent has verified that unit tests pass and history is squashed), the push proceeds.
5. If not `200 OK`, the wrapper blocks the push and alerts the user to fix tests or run `gsquash`.
### Benefits of the Wrapper Approach
* **Universal Enforcement:** The push safety gate is protected across all repositories automatically, without copying hook scripts.
* **No File Locks:** Uses safe, lightweight, parallelizable HTTP requests rather than executing the Rust binary directly.
* **Action Logging:** The wrapper can be seamlessly extended to log actions (like `checkout` or `commit`) directly into the knowledge graph in real-time.
## 5. Storage Architecture & Persistence (WAL)
The daemon utilizes a Write-Ahead Logging (WAL) architecture for robust, high-performance state management, replacing fragmented delta-file reconciliation and massive synchronous JSON rewrites.
### Key Principles:
* **Append-Only Log:** Every state change (e.g., adding an entity, updating a task) is instantly appended to a sequential, append-only log file (wal.log) *before* in-memory state is altered.
* **Crash Resilience:** Eliminates data corruption. If the daemon is forcefully terminated, the system guarantees zero data loss by replaying the WAL against the last known valid checkpoint upon restart.
* **Asynchronous Checkpointing:** Master JSON store files are no longer rewritten on every tool call. Checkpointing (flushing memory to the master JSON files) is pushed to a background thread to run periodically or upon graceful shutdown, drastically reducing disk I/O.
## 6. Domain Models & Component Stores
While the core architecture relies on a unified Knowledge Graph (Entities, Relations, Observations), the daemon leverages a modular, thread-safe generic Store<T> pattern for specialized domains.
Currently implemented persistent stores include:
* **Audit Ledger & Tasks:** Tracks agent actions and active background tasks.
* **Context & Handoffs:** Sticky notes, Session Summaries, Handoff Memos, and Context Workspaces.
* **Engineering Tracking:** ADRs (Architecture Decision Records), Snippets, Error Fixes, Tech Debt, and PR Checklists.
* **Environment State:** Pinned Files, Env Fingerprints, Milestones, and Environments.
## 7. Background Maintenance (Reconcile Worker)
The daemon runs a continuous asynchronous background task (
econcile_worker) on a 5-second polling loop responsible for:
* **State Reconciliation:** Reading the append-only wal.jsonl file, squashing the mutations into the master knowledge graph, and cleanly truncating the WAL.
* **Ledger Pruning:** Automatically truncating the audit_ledger.json to keep only the last 7 days of activity, with a hard cap of 1,000 records to prevent infinite bloat.
* **Ephemeral Data Cleanup:** Automatically expiring and purging sticky_notes.json that are older than 24 hours.
## 8. The Gate System (Push Safety Verification)
The binary includes dedicated CLI subcommands (gate set and gate verify) that interact with a persistent gates.json store to enforce safety policies (like ensuring tests pass before a git push).
* **mcp-memory-stub gate set**: Records an authorization status (authorized, blocked, or pending) for a specific target and namespace, alongside optional failure reasons and parameters.
* **mcp-memory-stub gate verify**: Evaluates a pending action against the gate store. It returns exit code if authorized, 1 if explicitly blocked, and 2 if no gate record exists. It also supports a --consume flag to immediately revoke the authorization after a successful check.
## 9. Operational Configuration & Paths
The physical storage location of the knowledge graph and all persistent stores is strictly controlled by the MCP_MEMORY_STORE_DIR environment variable.
* **Default Path:** If not set, the daemon defaults to ~/.gemini/mcp_memory.
* **Port Binding:** The Axum HTTP server strictly binds to .0.0.0:3000.
## 10. Exposed MCP Capabilities (Tools)
The server implements the Model Context Protocol (MCP) by exposing a vast suite of tools via the JSON-RPC interface, categorized broadly into:
* **Graph Management:** create_entities, create_relations, merge_entities,
ead_graph, etc.
* **Task & Context Tracking:** add_task, add_sticky_note, add_session_summary, etc.
* **Engineering & DevOps:** log_code_change, log_error_fix, log_tech_debt, add_pr_checklist_item.
* **Environment & Workspaces:**
egister_environment, save_context_workspace, pin_file.
## 11. Concurrency & Thread Safety
With the introduction of the Dual Transport System, the daemon must safely handle simultaneous read/write requests from both Stdio (Windows agy) and HTTP (WSL agy) clients.
* **Shared State:** The entire server operates on a cloned Arc<MemoryState>.
* **Locking Mechanism:** The unified Knowledge Graph and modular Store<T> components are protected by RwLock primitives.
* **Safe Mutation:** Store modifications utilize closure-based modify(|store| { ... }) methods to ensure locks are safely acquired, mutations applied, and file writes executed sequentially without deadlocking the asynchronous Tokio runtimes.
## 12. Lifecycle & Startup Management (Server/Stub Architecture)
The mcp-memory daemon employs a self-healing, morphing Server/Client paradigm to allow multiple concurrent agy sessions without port collisions or file lock contention.
### The Windows Background Daemon
Every time a Windows gy session starts, it blindly spawns mcp-memory-stub.exe as a proxy. The proxy expects the mcp-memory-server.exe daemon to be running natively on port 3000.
### WSL (Linux) Client Lifecycle (Permanent Stub)
To provide a seamless experience without complex configuration drift, the WSL environment utilizes a native Linux binary (`/home/riz/.local/bin/mcp-memory-stub`) that acts as a **Permanent Stub**.
* **Transparent Proxying:** The WSL `agy` CLI spawns this Linux binary via standard `stdio`. The binary immediately proxies all `stdio` JSON-RPC requests over HTTP to the Windows Leader at `http://127.0.0.1:3000/messages`, handling SSE streams transparently.
* **Startup via Interop:** Upon launch, the Linux Stub pings the Windows host. If port 3000 is dead, the Linux binary automatically executes WSL interop (`cmd.exe /c start /B C:\Users\reazul.ashraf\.local\bin\mcp-memory.exe`) to silently wake up the Windows Leader before commencing the proxy loop.
* **Zero I/O Penalty:** This ensures the Linux binary never directly touches the Windows NTFS files, reserving all heavy disk operations for the native Windows host.
## 13. Cargo Workspace & Binary Artifacts
To optimize for different environments, the codebase is structured as a Cargo Workspace containing two distinct crates:
### 1. mcp-memory-server (The "Full-Fat" Daemon)
* **Path:** server/
* **Size/Complexity:** Heavy (contains Axum, MCP SDK, JSON parsing, Tokio runtime).
* **Role:** This is the primary background daemon. It binds to .0.0.0:3000, holds file locks, and manages the graph.
* **Windows Behavior:** It is designed to run in the background as a standalone service.
### 2. mcp-memory-stub (The Ultra-Lightweight Proxy)
* **Path:** stub/
* **Size/Complexity:** Extremely light (only relies on
eqwest and okio).
* **Role:** A dedicated, OS-agnostic proxy binary used strictly for routing stdio JSON-RPC traffic over HTTP to a remote Leader. Windows gy clients point directly to this binary to bypass loading the heavy Server daemon into memory.
* **WSL Behavior:** Compiled as a Linux native binary (x86_64-unknown-linux-musl). When executed by WSL agy, it acts as a transparent proxy to http://127.0.0.1:3000. It can also execute wake_cmd (e.g., WSL interop) to silently wake the Windows host if the Leader is offline.