feat(mcp): switch to YAML serialization for tool outputs

- Replaced serde_json with serde_yaml in all handler endpoints.

- This drastically reduces token consumption for large list/graph responses by removing JSON braces and quotes.

Cargo.lock

@@ -2654,6 +2654,7 @@ dependencies = [
  "schemars",
  "serde",
  "serde_json",
+ "serde_yaml",
  "tantivy",
  "tempfile",
  "thiserror 2.0.20",
@@ -4342,6 +4343,19 @@ dependencies = [
  "serde",
 ]
 
+[[package]]
+name = "serde_yaml"
+version = "0.9.34+deprecated"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "6a8b1a1a2ebf674015cc02edccce75287f1a0130d394307b36743c2f5d504b47"
+dependencies = [
+ "indexmap",
+ "itoa",
+ "ryu",
+ "serde",
+ "unsafe-libyaml",
+]
+
 [[package]]
 name = "sha1"
 version = "0.10.7"
@@ -5438,6 +5452,12 @@ version = "0.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "39ec24b3121d976906ece63c9daad25b85969647682eee313cb5779fdd69e14e"
 
+[[package]]
+name = "unsafe-libyaml"
+version = "0.2.11"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "673aac59facbab8a9007c7f6108d11f63b603f7cabff99fabf650fea5c32b861"
+
 [[package]]
 name = "untrusted"
 version = "0.9.0"