refactor: consolidate hypotheses, agent_signals, and process_logs into action-based smart tools
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# Antigravity State Management & Git Worktree Rules
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## State Tracking & Persistent Memory
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- **Long-term Knowledge (MCP):** Use the MCP memory graph strictly for long-term, persistent facts such as architectural decisions, environment invariants, SSH mappings, and user preferences.
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- **Long-term Knowledge (MCP):** Use the MCP memory graph strictly for long-term, persistent facts such as architectural decisions, environment invariants, SSH mappings, and domain entities. Static developer preferences and rules are kept in git-tracked markdown files.
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- **Transient State (Git):** Do NOT write transient task progress (e.g., "currently editing line 42") to MCP memory. Continue to use verbose, incremental local `git` commits to track short-term state and maintain rollback safety.
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## Branching Strategy & Workflow (Git Worktrees)
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