fix(mcp): Add missing Cargo.lock, lua bindings, and workspace fixes for tools

Cargo.lock

@@ -2130,6 +2130,10 @@ dependencies = [
  "tracing-appender",
  "tracing-subscriber",
  "tree-sitter",
+ "tree-sitter-c",
+ "tree-sitter-cpp",
+ "tree-sitter-go",
+ "tree-sitter-java",
  "tree-sitter-python",
  "tree-sitter-rust",
  "tree-sitter-typescript",
@@ -4209,6 +4213,46 @@ dependencies = [
  "tree-sitter-language",
 ]
 
+[[package]]
+name = "tree-sitter-c"
+version = "0.24.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a9b2eb57a55fed6b00812912e730b7a275cf4fe98bfd6a5d76263d4438371728"
+dependencies = [
+ "cc",
+ "tree-sitter-language",
+]
+
+[[package]]
+name = "tree-sitter-cpp"
+version = "0.23.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "df2196ea9d47b4ab4a31b9297eaa5a5d19a0b121dceb9f118f6790ad0ab94743"
+dependencies = [
+ "cc",
+ "tree-sitter-language",
+]
+
+[[package]]
+name = "tree-sitter-go"
+version = "0.25.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c8560a4d2f835cc0d4d2c2e03cbd0dde2f6114b43bc491164238d333e28b16ea"
+dependencies = [
+ "cc",
+ "tree-sitter-language",
+]
+
+[[package]]
+name = "tree-sitter-java"
+version = "0.23.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0aa6cbcdc8c679b214e616fd3300da67da0e492e066df01bcf5a5921a71e90d6"
+dependencies = [
+ "cc",
+ "tree-sitter-language",
+]
+
 [[package]]
 name = "tree-sitter-language"
 version = "0.1.8"